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Published Books/Mini-Book

1. Adebiyi, E. F. CODE MALARIA: Eradication developments for the decade. Covenant University 1st Inaugural lecture mini-book. Covenant University Press, 2011.
2. Adebiyi, E. F. and Fatumo, S. Mathematical methods and their applications. (A 771 pages peer reviewed text) Covenant University Press, 2006. (http://www.covenantuniversity.com/publications/pdf/cu-press.pdf)
3. Adebiyi, E.F. Pattern Discovery in Biology and Strings Sorting: Theory and Experimentation. (A 152 pages peer reviewed text) Shaker Publisher, Aachen, Germany, 2002. (http://www.shaker.de/)

Articles in Journals/Contributions to books

1.    Plaimas K, Wang Y, Rotimi SO, Olasehinde G, Fatumo S, Lanzer M, Adebiyi E, König R. Computational and experimental analysis identified 6-diazo-5-oxonorleucine as a potential agent for treating infection by Plasmodium falciparum. Infect Genet Evol. 2013 Dec;20:389-95. doi: 10.1016/j.meegid.2013.09.019. Epub 2013 Oct 9.
2.    Oluwagbemi OO, Fornadel CM, Adebiyi EF, Norris DE, Rasgon JL. ANOSPEX: a stochastic, spatially explicit model for studying Anopheles metapopulation dynamics. PLoS One. 2013 Jul 8;8(7):e68040. doi: 10.1371/journal.pone.0068040. Print 2013.
3.    Fatumo S, Adebiyi M, Adebiyi E. In silico models for drug resistance. Methods Mol Biol. 2013;993:39-65. doi: 10.1007/978-1-62703-342-8_4.
4.    Dike IP, Obembe OO, Adebiyi FE. Ethnobotanical survey for potential anti-malarial plants in south-western Nigeria. J Ethnopharmacol. 2012 Dec 18;144(3):618-26. doi: 10.1016/j.jep.2012.10.002. Epub 2012 Oct 18.
5.    Victor Osamor, Ezekiel Adebiyi, Jelilli Oyelade and Seydou Doumbia. Reducing the time requirement of k-means algorithm. PLoS ONE 7(12), 2012: e49946. doi:10.1371/journal.pone.0049946
6.    Fatumo, S., Kitiporn, P., Adebiyi, E. and Koenig, R. Comparing metabolic network models based on genomic and automatically inferred enzyme information from Plasmodium and its human host to define drug targets in silico. Infect Genet Evol. 2011 Jan;11(1):201-8. Epub 2010 Sep 8.
7.    Oyelade J, Ewejobi I, Brors B, Eils R, Adebiyi E. Computational identification of signaling pathways in Plasmodium falciparum. Infect Genet Evol. 2010 Nov 26. [Epub ahead of print].
8.    Chinwe Ekenna, Segun Fatumo and Ezekiel Adebiyi. In-silico evaluation of malaria drug targets. IACSIT International Journal of Engineering and Technology, 2(2), 132-135, 2010.
9.    Victor Chukwudi Osamor, Ezekiel Femi Adebiyi, and Seydou Doumbia. Clustering Plasmodium falciparum Genes to their Functional Roles Using k-means. IACSIT International Journal of Engineering and Technology, 2(2), 215-225, 2010.
10.    Nelson N. Gichora, Segun A. Fatumo, Mtakai V. Ngara, Noura Chelbat, Kavisha Ramdayal, Kenneth B. Opap, Geoffrey H. Siwo, Marion O. Adebiyi, Amina El Gonnouni, Denis Zofou, Amal A. M. Maurady, Ezekiel F. Adebiyi, Etienne P. de Villiers, Daniel K. Masiga, Jeffrey W. Bizzaro, Prashanth Suravajhala, Sheila C. Ommeh, Winston Hide.
11.Ten Simple Rules for Organizing a Virtual Conference—Anywhere. PLoS Comput Biol 6(2): e1000650. doi:10.1371/journal.pcbi.1000650, 2010.
12.    Valverde, J. and Adebiyi, E. 2nd International workshop on pattern discovery in biology: Synapses: Bridging the gaps between biologists and bioinformaticians. EMBnet.news 15(3), 8-10, 2009.
13.    Fatumo, S., Plaisma, K., Mallm, J-P., Schramm, G., Adebiyi, E., Oswald, M. Eils, R. and Koenig, R. Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico.  ScienceDirect Infection, Genetics and Evolution (IGE), 9(3), 351-358, 2009.
14.    Adebiyi, M., Fatumo, S. and Adebiyi, E. Computational Discovery of Drugs Resistance Mechanism(s) of the Malaria Parasite to Tetracyclines and Chloroquines. The Journal of Computer Science and its Application, 17(2), 2009.
15.    Akinyemi, I. O., Adebiyi, E. F., Longe, H.O. D. Critical analysis of decision making experience with a machine learning approach in playing Ayo game. World Academy of Science, Engineering and Technology, 56, 49-54, 2009.
16.    Osamor, V., Adebiyi, E., and Doumbia, S. Comparative functional classification of Plasmodium falciparum genes using k-means clustering. IACSIT, IEEE Computer Society Press, 17, 491-495, 2009.
17.    Fatumo, S., Adebiyi, E., Schramm, G., Eils, R. & König, R. (2009). An in silico approach to design an efficient malaria drug to combat the malaria resistance problem. IACSIT, IEEE Computer Society Press, 17, 564-569, 2009.
18.    Fatumo, S. A., Akinyemi, I. O. and Adebiyi, E. F. Aligning multiple sequences with genetic algorithm. Intl Journal of Computer theory and Engineering, 1(2), 179-182, 2009.
19.    Fatumo, S. A., Adebiyi, E. F., Adebiyi, M. O. and Ekenna, C. P. An efficient graph based greedy algorithm for the analysis of metabolic network on its topology. The Journal of Computer Science and its Application, 15:1, 14-21, 2008.
20.    Fatumo S.A and Adebiyi E.F. A comparative study of Human and Rodent infected Plasmodium Species: Biochemical Approach, International Journal of Malaria and Tropical Diseases, Nigeria, 4(1), 147-155, 2008.
21.    Oluwagbemi O.O, Adebiyi E.F, Fatumo S.A and Dawodu Ayo. PQ Trees, Consecutive Ones Problem and Applications, International Journal of Natural and Applied Sciences, 4(3): 262-277, 2008.
22.    Akinyemi, I. O., Olugbara, O. O., Longe, H. O. D. and Adebiyi, E. F. On nearest neighbour refinement strategy for evolving Ayo game player. The Journal of Computer Science and its Application, 15:1, 48-58, 2008.
23.    Adebiyi, E. F. and Rivals, E. Detection of recombination in variable tandem repeats sequences. South Africa Computer Journal (SAC J), 39, 1-7, 2007.
24.    Bulashevska, S., Adebiyi, E. F., Brors, B., and Eils, R. New insights into the genetic regulation of Plasmodium Falciparum obtained by Bayesian modelling. (12 pages).  Gene Regulation and System Biology, 1, 137-149, 2007.
25.    Adebiyi, E. F. A comparative analysis of existing oligonucleotides selection algorithms for microarray technology (5 pages).  African Journal of Biotechnology, Vol. 6 (13), pp. 1582-1586, 4 July 2007.
26.    Adebiyi, E. F. The left and right extension problems revisited, (7 pages). The Journal of Computer Science and its Application, 14(1), 75-85, 2007.
27.    Fatumo, S.  and Adebiyi, E. On global alignment algorithm implementation. International Journal of Natural and Applied Science (IJONAS), 2(4), 300-304, 2006.
28.    Adebiyi, E. F. A Subqradratic time generation of |∑|q dictionary from string(s) using suffix tree, (7 pages). The Journal of Computer Science and its Application, 13(1), 25-31, 2006.
29.    Adebiyi, E. F.  Systems biology and the development of vaccines and drugs for malaria treatment. (7 pages) Biokemistri, 18(1): 1-7, June 2006.
30.    Adebiyi, E.F. and Kaufmann, M. Extracting Common Motif under the Levenshtein Metric: Theory and Experimentation, Lecture Note in Computer Science (LNCS), 140-156, 2002.
31.    Adebiyi, E. F., Jiang, T., and Kaufmann, M. An efficient algorithm for finding short approximate non-tandem repeats (Extended abstract), Bioinformatics 17(1): S5-S13, 2001.
32.    Adebiyi, E. F. A further step toward improving Ayo game system, AMSE, 3(2): 53-69, 1999.
33.    Bamigbola, O. M and Adebiyi, E. F. Generalized basis of finite order. Journal of Computer Metrics, 1, 73-86, 1997.

Published Contributions to Academic Conferences/Symposium

1.    Emmanuel ADETIBA,Frank A. IBIKUNLE, Ezekiel F.ADEBIYI. Development of Encoding and Dimensionality Reduction Algorithms for a Genomics Based Medical Diagnostic Probe on Artificial Intelligence Platform. Paper Proceeding of the IEEE Computational Intelligence Society Symposium Series on Computational Intelligence(SSCI 2013), 16th -19th April, Singapore.
2.    Victor Osamor and Ezekiel Adebiyi. A Simplified Integrated Automation of Clustering Indices for Quality Validation and Comparison. Paper proceeding of the ISCB Africa ASBCB conference on Bioinformatics, Casablanca, Morocco, 2013
3.    Angela Makolo, Adenike Osofisan and Ezekiel Adebiyi. Identification of Transcription Associated Proteins in Plasmodium Falciparum. Paper proceeding of the ISCB Africa ASBCB conference on Bioinformatics, Casablanca, Morocco, 2013
4.    Jelili Oyelade, Benedikt Brors and Ezekiel Adebiyi. An Ensemble framework for Small World Clustering Coefficient for protein-protein interaction networks in Plasmodium falciparum. Poster proceeding of the 2013 ISCB/ECCB, Berlin, Germany.
5.    Oyeteju Oladimeji, Olugbenga Oluwagbemi and Ezekiel Adebiyi. afriPFdb: An Enhanced Database For Plasmodium falciparum Genomes. Poster proceeding of the 2013 ISCB/ECCB, Berlin, Germany.
6.    Itunuoluwa Isewon, Benedikt Brors  and Ezekiel Adebiyi. Computational mining of transcriptional regulators from the genome of Plasmodium falciparum. Poster proceeding of the 2013 ISCB/ECCB, Berlin, Germany.
7.    Emmanuel Adetiba, Frank A. Ibikunle, and Ezekiel F. Adebiyi. Genomics Mutations’ based Artificial Neural Network Ensemble and Field Programmable Gate Array Framework for Lung Cancer Diagnosis. Poster Proceeding of IEEE Health Innovation Conference(IEEE HIC), 7th-9th November, 2012, Houston Texas, USA.
8.    Chinedu, S., Fatumo, S and Adebiyi, E. In-Silico Studies of Essential Metabolic Reactions of Trypanosoma brucei: Identifying Potential Drug Targets. 2010 International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics (BCBGC-10).
9.    Ogunlana, O. O., Ekenna, C., Fatumo, S., Adebiyi, E., Ogunlana, O. E., Adebayo, H. A., Ayodele, W. O., Oluwagbemi, O., Omotosho, O. E. In-silico structural prediction of human Scavenger receptor type B1 (SRB1) – a novel approach to the discovery of prophylactic agent against Plasmodium falciparum. Proceeding of the 1st Joint ISCB Africa ASBCB Conference on Bioinformatics of Infectious Diseases, MRTC, Bamako, Mali, November 30  – December 2, 2009.
10.    Ewejobi, I., Adebiyi, E. F., Bulashevska, S., Brors, B., Eils, R. In-silico prediction of the genetic regulatory interactions in Maurer’s cleft pathway of Plasmodium falciparum. Proceeding of the 1st Joint ISCB Africa ASBCB Conference on Bioinformatics of Infectious Diseases, MRTC, Bamako, Mali, November 30  – December 2, 2009.
11.    Jelili Oyelade, Ezekiel Adebiyi, Svetlana Bulashevska, Benedikt Brors and Roland Eils. Computational identification of functional modules in Plasmodium falciparum. Proceeding of the 1st Joint ISCB Africa ASBCB Conference on Bioinformatics of Infectious Diseases, MRTC, Bamako, Mali, November 30  – December 2, 2009.
12.    Adebiyi, E., Owolabi, M., Fatumo, S. Koenig, R., Schramm, G., Kranz, A-L, and Eils, R. Elucidating the Drugs Resistance Mechanism(s) of the Malaria Parasite to Tetracyclines and Chloroquines. Proceeding of the 1st Joint ISCB Africa ASBCB Conference on Bioinformatics of Infectious Diseases, MRTC, Bamako, Mali, November 30  – December 2, 2009.
13.    Fatumo, S., Kitiporn, P., Adebiyi, E., Eils, R. and Koenig, R. Host factors improve robustness of the metabolism of Plasmodium falciparum. Proceeding of the 1st Joint ISCB Africa ASBCB Conference on Bioinformatics of Infectious Diseases, MRTC, Bamako, Mali, November 30  – December 2, 2009.
14.    Fatumo, S., Adebiyi, E., and Koenig, R. Inferring the metabolic network of Plasmodium falciparum in the host. Presentation at the first African virtual conference on Bioinformatics, Feb. 19-20, 2009.
15.    Adebiyi, E. and Olugbemi, O. Modeling the Malaria Parasite-Mosquito Midgut Cell Interactions. 6th Annual Rocky Mountain Bioinformatics Conference (Rocky ’08), Snowmass/Aspen, Colorado, USA, December 4-7, 2008.
16.    Fatumo, S., Gunnar, S., Adebiyi, E., Eils, R. and Koenig, R. Comparing the biochemical networks of human and rodent cells infected with different Plasmodium species. Poster proceeding of the EMBnet conference –“Leading applications and technologies in Bioinformatics”, 2008.
17.    Ewejobi, I., Adebiyi, E., Ekenna, C, Rebai, A., Koenig, R., Brors, B., Doumbia, S. , Oyelade, J., Osamor, V., Fatumo, S., Eils, R., Lanzer, M. The African Plasmodium falciparum database (afriPFdb). Poster proceeding of the European Conference on Computational Biology (ECCB), Cagliari, Sardinia-Italy, 22-26 September, 2008.
18.    Dike.I, Adebayo.A, Fatumo.S, Olasehinde.G, Ewejobi.I, Ekenna.C and Adebiyi. E. Unveiling Potential Variants: Phylogenetic Analysis of Eight African Species of Artemisia. Poster proceeding of the ISMB 2008.
19.    Adebayo.A, Obembe.O, Dike.I, Ajayi.A, Ogunlana.O and Adebiyi, E. Tracking lead compounds in African species of Commiphora. Poster proceeding of the ISMB 2008.
20.    Chinedu, S., Omonhinmin A. , Dike, I., Omotosho, O., Osamor, V., Oyelade, O. and Adebiyi, E. Species Level Characterization in Thaumatococcus: Re-evaluating  Morphological evidences via In-Silico Studies. Poster proceeding of the ISMB 2008.
21.    Oyelade, O. J., Adebiyi, E. F., Yah S.C., and Olaseinde G. I. Computational Identification of functional related gene in Malaria parasites. Poster proceeding of the ISMB 2008.
22.    Osamor, V., Oyelade, I., Adebiyi, E. and Doumbia, S. Metric Matrices k-means (MMk-means) algorithm for clustering malaria microarray data. Poster proceeding of the ISMB 2008.
23.    Segun Fatumo, Kitiporn Plaimas, Marion Adebiyi, Gunnar Schramm, Ezekiel Adebiyi, Roland Eils and Rainer König. A comparative study of plasmodium species that infect human and rodents: Biochemical Approach. Poster proceeding of the ISMB 2008.
24.    Chinwe Ekenna , Segun Fatumo, Ezekiel Adebiyi, Gunnar Schramm, and Rainer Konig. Classification of novel Malaria drug targets for efficient possible drug combination. Poster proceeding of the ISMB 2008.
25.    Omolola Akinyemi, Segun Fatumo, Kehinde Ikugbonmire, Olalere Alao, Chinwe Ekenna, Onyeka Emebo and Ezekiel Adebiyi. Bioinformatics Characterization of Novel Malaria Drug Targets. Poster proceeding of the ISMB 2008.
26.    Segun Fatumo, Kitiporn Plaimas, Ezekiel Adebiyi, Roland Eils and Rainer König. In silico knock out screening of the metabolic network of plasmodium falciparum to yield Potential Drug Targets, Poster Proceeding of ISMB/ECCB 2007, Vienna, Austria, 21-27 July 2007.
27.    Fatumo, S., Plaimas, K., PhilipStier, J., Adebiyi, E., Oswald, M., Eils, R., and Koenig, R.  Computational Identification of Essential Reactions in Plasmodium falciparum to yield Potential Drug Targets (2 pages).  Current in Computational Biology, Posters Proc. Eleventh Annual International Conferences on Research in Computational Molecular Biology (RECOMB), San Francisco, USA, 2007.
28.    Adebiyi, E. A convoluted problem and heuristic solution for predicting ensembles and transitions for pseudoknots polymers. Paper Proc. International Conference on the Bioinformatics of African Pathogens and Disease Vectors (Bioinformatics for Africa), Nairobi, Kenya, May 28 – June 2, 2007.
29.    Osamor, V. C., Adebiyi, E. and Doumbia, S. K-Means clustering and the analysis of malaria microarray data (MMD). Poster Proc. International Conference on the Bioinformatics of African Pathogens and Disease Vectors (Bioinformatics for Africa), Nairobi, Kenya, May 28 – June 2, 2007.
30.    Fatumo, S., Plaisma, K., Adebiyi, E., Oswald, M. Eils, R. and Koenig, R. In silico knock-out screening of the metabolic network of Plasmodium falciparum to yield potential drug targets.  Poster Proc. International Conference on the Bioinformatics of African Pathogens and Disease Vectors (Bioinformatics for Africa), Nairobi, Kenya, May 28 – June 2, 2007.
31.    Owolabi, M., Fatumo, S. Koenig, R., Schramm, G., Kranz, A-L, Eils, R, and Adebiyi, E. Computational Discovery of Drugs Resistance Mechanism(s) of the Malaria Parasite (Plasmodium falciparum (P.f)).  Paper Proc. International Conference on the Bioinformatics of African Pathogens and Disease Vectors (Bioinformatics for Africa), Nairobi, Kenya, , May 28 – June 2, 2007.
32.    Adebiyi, E. An efficient algorithm for oligonucleotides selection in a large EST databases. (12 pages). Reviewed Presentation  at the First Southern African Bioinformatics Workshop (SAB), 2007.
33.    Adebiyi, E. and Rivals, E. On the detection of recombination in minisatellite data. (7 pages). First Southern African Bioinformatics Workshop (SAB), 25-31, 2007.
34.    Adebiyi, E. F., Bulashevska, S., Brors, B., and Eils, R. New insights into the genetic regulation of Plasmodium falciparum obtained by Bayesian modelling. (1 page). ICE-EM Summer Symposium in Bioinformatics, Sydney, Australia, Dec 3-8, 2006.
35.    Fatumo, S., Adebiyi, E., Mueller, S., Osward, M, Reinelt, G., Eils, R, and Koenig, R. In silicon knock-out screening of the metabolic network of Plasmodium falciparum to yield potential drug targets. (1 page). DKFZ structural and functional genomics retreat, Heilbronn, Germany, Nov. 2-3, 2006.
36.    Adebiyi, E. F. and Oyelade, J. O. A comparative analysis of existing oligonucleotides selection algorithms and optimal parallel oligos selection for large EST databases (Extended abstract). (10 pages). Proceedings of Intl Conf. On New Trends on Mathematics and Computer Sciences with Applications to Real World Problems, NTMCS, pp 635-653, June 19-23, 2006
37.    Adebiyi, E. F., Osamor, V. C. and Fatumo, S. A. Conventional doctor’s medication steps versus technologies emerging from bioinformatics. (13 pages). 1st International Conference on Human Development (ICHD), Covenant University, Ota, Nigeria, June 27-30, 2005.
38.    Ekong, V. E., Ayo, C. K., Adebiyi, E. F., Ikhu-Omoregbe, N. A. and Ekong, U. The role of science and technology in global health. (7 pages) . 1st International Conference on Human Development (ICHD), Covenant University, Ota, Nigeria, June 27-30, 2005.
39.    Adebiyi, E. F., Fatumo, S  and Osamor, V. A.  A significant difference in output among microarray experiment front-end tools. (1 page). Poster proceeding of the 13th Annual International conference on Intelligent Systems for Molecular Biology (ISMB), Michigan, USA, 2005 and also presented at the Covenant University International Workshop on Pattern Discovery in Biology (CUWPDB 2005), April 18-27,2005.
40.    Adebiyi, E. F. The probability of occurrence in a single sequence. Current in Computational Biology, Posters Proc. Eighth Annual International Conferences on Research in Computational Molecular Biology (RECOMB), San Diego, USA, 451-2, 2004.
41.    Adebiyi, E. F. and Dipe T. Finding higher order motifs under the levenshtein measure. Posters Proc. of the second IEEE Computer Society Bioinformatics Conference (CSB), Stanford, USA, 583-4, 2003.
42.    Adebiyi, E. F. Extracting Simple Motif under the Levenshtein Metric, Current in Computational Biology, Posters Proc. Sixth Annual International Conferences on Research in Computational Molecular Biology (RECOMB), Washington, USA, 1-2, 2002.
43.    Adigun, M.O.,Olugbara, O.O. and Adebiyi , E.F.  A formal model of tool support for class distribution. Proc. 13th International Conf. on Trend in Computing: Hardware, Software and Networking, COAN, vol. 7: 186-208, 1996.
44.    Adigun, M. O., Adebiyi, E. F. and  Olugbara, O. O. Using interface equation to characterise proper modularity. Proc. 13th International Conf. on Trend in Computing: Hardware, Software and Networking, COAN, 7, 209-227, 1996.
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